Glyma02g01590 - SoyBase

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Report for Sequence Feature Glyma02g01590

Feature Type:	gene_model
Chromosome:	Gm02
Start:	1124343
stop:	1125600
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma02g01590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10530	AT	Annotation by Michelle Graham. TAIR10: Concanavalin A-like lectin protein kinase family protein \| chr5:3324978-3326933 REVERSE LENGTH=651	SoyBase	E_val: 5.00E-26	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
PF00139	PFAM	Legume lectin domain	JGI		ISS
UniRef100_P05046	UniRef	Annotation by Michelle Graham. Best UniRef hit: Lectin n=3 Tax=Glycine max RepID=LEC_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P05046	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lectin n=3 Tax=Glycine max RepID=LEC_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma02g01590

Locus	Gene Symbol	Protein Name
	Le1-1	Lectin 1 gene 1

Expression Patterns of Glyma02g01590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma02g01590

Paralog	Evidence	Comments
Glyma10g01620	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma02g01590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.02g012600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma02g01590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma02g01590

Limit To All Plant Sequences

>Glyma02g01590.1   sequence type=CDS   gene model=Glyma02g01590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTTCAAAGTTGAAAACCCAGAATGTGGTTGTATCTCTCTCCCTAACCTTAACCTTGGTACTGGTGCTACTGACCAGCAAGGCAAACTCAGCGGAAACTGTTTCTTTCAGCTGGAACAAGTTCGTGCCGAAGCAACCAAACATGATCCTCCAAGGAGACGCTATTGTGACCTCCTCGGGAAAGTTACAACTCAATAAGGTTGACGAAAACGGCACCCCAAAACCCTCGTCTCTTGGTCGCGCCCTCTACTCCACCCCCATCCACATTTGGGACAAAGAAACCGGTAGCGTTGCCAGCTTCGCCGCTTCCTTCAACTTCACCTTCTATGCCCCTGACACAAAAAGGCTTGCAGATGGGCTTGCCTTCTTTCTCGCACCAATTGACACTAAGCCACAAACACATGCAGGTTATCTTGGTCTTTTCAACGAAAACGAGTCTGGTGATCAAGTCGTCGCTGTTGAGTTTGACACTTTCCGGAACTCTTGGGATCCACCAAATCCACACATCGGAATTAACGTCAATTCTATCAGATCCATCAAAACGACGTCTTGGGATTTGGCCAACAATAAAGTAGCCAAGGTTCTCATTACCTATGATGCCTCCACCAGCCTCTTGGTTGCTTCTTTGGTCTACCCTTCACAGAGAACCAGCAATATCCTCTCCGATGTGGTCGATTTGAAGACTTCTCTTCCCGAGTGGGTGAGGATAGGGTTCTCTGCTGCCACGGGACTCGACATACCTGGGGAATCGCATGACGTGCTTTCTTGGTCTTTTGCTTCCAATTTGCCACACGCTAGCAGTAACATTGATCCTTTGGATCTTACAAGCTTTGTGTTGCATGAGGCCATCTAA

Predicted protein sequences of Glyma02g01590

Limit To All Plant Sequences

>Glyma02g01590.1   sequence type=predicted peptide   gene model=Glyma02g01590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSKLKTQNVVVSLSLTLTLVLVLLTSKANSAETVSFSWNKFVPKQPNMILQGDAIVTSSGKLQLNKVDENGTPKPSSLGRALYSTPIHIWDKETGSVASFAASFNFTFYAPDTKRLADGLAFFLAPIDTKPQTHAGYLGLFNENESGDQVVAVEFDTFRNSWDPPNPHIGINVNSIRSIKTTSWDLANNKVAKVLITYDASTSLLVASLVYPSQRTSNILSDVVDLKTSLPEWVRIGFSAATGLDIPGESHDVLSWSFASNLPHASSNIDPLDLTSFVLHEAI*

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